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raw sequencing data (.bcl files) generated from illumina  (Illumina Inc)


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    Illumina Inc raw sequencing data (.bcl files) generated from illumina
    Raw Sequencing Data (.Bcl Files) Generated From Illumina, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+raw+sequencing+data+files/raw+sequence+reads/pmc10786293__pnas__2308415120__sapp-22-7-8
    Average 90 stars, based on 1 article reviews
    raw sequencing data (.bcl files) generated from illumina - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Targeted immunotherapy rescues pulmonary fibrosis by reducing activated fibroblasts and regulating alveolar cell profile.
    Article Snippet: The experiments were supported by Bioprofile Inc. (Shanghai, China). scRNA-seq data preparation and analysis The Cell Ranger pipeline was used for processing all samples after sequencing (10× Genomics, V3.1.0). .. Raw sequencing data were demultiplexed and fastq files were generated using Illumina bcl2fastq software V 2.20. .. The scRNA-seq data were aligned to the Ensembl_v105_mus_musculus and row count matrices were imported to the R package Seurat V3.1.1.

    Article Title: Detecting mutations and ploidy in chromosomal segments
    Article Snippet: .. The raw AmpliSeq data sequencing files revealed that the data fell below the PGM or Illumina detectable threshold setting. ..

    Article Title: Inside the Belly of the Beast: Exploring the Gut Bacterial Diversity of Gonipterus sp. n. 2
    Article Snippet: Library preparation and paired-end Illumina MiSeq sequencing of DNA samples were outsourced to Macrogen, Inc., Seoul, South Korea. .. The raw Illumina sequence data files were deposited in the NCBI Sequence Read Archive ( https://submit.ncbi.nlm.nih.gov/subs/sra/ ) under the accession number PRJNA1150032. ..

    Article Title: Inside the Belly of the Beast: Exploring the Gut Bacterial Diversity of Gonipterus sp. n. 2.
    Article Snippet: Library preparation and paired-end Illumina MiSeq sequencing of DNA samples were outsourced to Macrogen, Inc., Seoul, South Korea. .. The raw Illumina sequence data files were deposited in the NCBI Sequence Read Archive (https:// submit. ncbi. nlm. nih. gov/ subs/ sra/) under the accession number PRJNA1150032. ..

    Article Title: Detecting mutations and ploidy in chromosomal segments
    Article Snippet: .. The raw AmpliSeq data sequencing files revealed that the data fell below the PGM or Illumina detectable threshold setting. ..

    Article Title: Mycobacterium bovis frd operon phase variation hijacks succinate signaling to drive immunometabolic rewiring and pathogenicity
    Article Snippet: .. For this study, we downloaded raw Illumina sequence data (FastQ files) for 929 M. bovis isolates from NCBI Sequence Read Archive (SRA) (Supplementary Data ). .. The data processing pipeline comprised the following steps: First, fastp (v0.20.1) was employed to remove low-quality bases (Phred score < 20) and residual Illumina adapter contamination from the FastQ files.

    Article Title: Detecting mutations and ploidy in chromosomal segments
    Article Snippet: .. The raw AmpliSeq data sequencing files revealed that the data fell below the PGM or Illumina detectable threshold setting. ..

    Generated:

    Article Title: Targeted immunotherapy rescues pulmonary fibrosis by reducing activated fibroblasts and regulating alveolar cell profile.
    Article Snippet: The experiments were supported by Bioprofile Inc. (Shanghai, China). scRNA-seq data preparation and analysis The Cell Ranger pipeline was used for processing all samples after sequencing (10× Genomics, V3.1.0). .. Raw sequencing data were demultiplexed and fastq files were generated using Illumina bcl2fastq software V 2.20. .. The scRNA-seq data were aligned to the Ensembl_v105_mus_musculus and row count matrices were imported to the R package Seurat V3.1.1.

    Software:

    Article Title: Targeted immunotherapy rescues pulmonary fibrosis by reducing activated fibroblasts and regulating alveolar cell profile.
    Article Snippet: The experiments were supported by Bioprofile Inc. (Shanghai, China). scRNA-seq data preparation and analysis The Cell Ranger pipeline was used for processing all samples after sequencing (10× Genomics, V3.1.0). .. Raw sequencing data were demultiplexed and fastq files were generated using Illumina bcl2fastq software V 2.20. .. The scRNA-seq data were aligned to the Ensembl_v105_mus_musculus and row count matrices were imported to the R package Seurat V3.1.1.

    other:

    Article Title: Therapy response monitoring in blood plasma from esophageal adenocarcinoma patients using cell-free DNA methylation profiling
    Article Snippet: For sequencing run 128 hard trimming was needed as Illumina adapter sequences were incorrectly removed and raw sequencing data (bcl files) were not available anymore (flags --three_prime_clip_R1 3 --three_prime_clip_R2 3 --clip_R1 3 --clip_R2 4).



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